Research Team

Mariana was a 3-year Software Engineer in our research group. Was supervised by Estibaliz Gómez de Mariscal, Bruno Saraiva and Ricardo Henriques. Worked on 3 publications. Contributed to 2 technologies. Collaborated with 6 labs.

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Latest news

• 2024-06-02: News outlet Labonline highlights Hidalgo-Cenalmor et al. Nature Methods 2024 [external link]
• 2024-05-28: News outlet MSN highlights Hidalgo-Cenalmor et al. Nature Methods 2024 [external link]
• 2024-05-27: News outlet Aamuset Kaupunkimedia highlights Hidalgo-Cenalmor et al. Nature Methods 2024 [external link]
• 2024-05-17: Blog news-medical.net highlights Hidalgo-Cenalmor et al. Nature Methods 2024 [external link]

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Collaborations

Anna Kreshuk

EMBL
Heidelberg, Germany

Joint: 2 2

Florian Jug

Human Technopole
Milan, Italy

Joint: 4 1

Guillaume Jacquemet

Abo Akademi University
Turku, Finland

Joint: 21 1

Mariana Pinho

ITQB NOVA
Oeiras, Portugal

Joint: 6 1 2

Wei Ouyang

SciLifeLab
Stockholm, Sweden

Joint: 5 1

Yoav Shechtman

Technion - Israel Institute of Technology
Haifa, Israel

Joint: 6

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Technologies

DL4MicEverywhere Newest update: 2026-08-17

8 86 86 17

Rescale4DL Newest update: 2026-07-14

4 3 3 1

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Latest Outreach

Spring Break University ITQB NOVA; Câmara Municipal de Oeiras, Oeiras - Portugal April 2025

ITQB NOVA's Open Day ITQB NOVA, Oeiras - Portugal March 2025

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Latest publications with our group (see more on Google Scholar)

AI4Life Open Calls and Public Challenges: why, how, and what we have learned Vera Galinova, Mehdi Seifi, Beatriz Serrano Solano, Kristína Lidayová, Damian Dalle Nogare, Agustín Andrés Corbat, Joshua Talks, Edoardo Giacomello, Estibaliz Gómez-de-Mariscal, Mariana G. Ferreira, Caterina Fuster-Barceló, Juan Manuel Battagliotti, Carlos García-López-de-Haro, Benjamin Salmon, Melisande Croft, Si Young Yie, Guillermo Rey-Paniagua, Xiaotian Hu, Sungjun Cho, Aagam Sheth, Chhayansh Porwal, Xiaomeng Li, AI4Life Consortium, Ricardo Henriques, Xinyang Li, Alexander Krull, Anna Klemm, Arrate Muñoz Barrutia, Anna Kreshuk, Wei Ouyang, Florian Jug, Joran Deschamps Preprint published in bioRxiv, July 2026 Technologies: BioImage Model Zoo (), CARE (), DL4MicEverywhere (), mAIcrobe (), Nuclear-Pores as references and ZeroCostDL4Mic () Funded by: Chan Zuckerberg Initiative (CZI), The Kavli Foundation, and The Wellcome Trust, ERC, H2021, H2022 and La Caixa Foundation DOI: 10.64898/2026.07.21.739486

ReScale4DL: Balancing Pixel and Contextual Information for Enhanced Bioimage Segmentation Mariana G. Ferreira, Bruno M. Saraiva, António D. Brito, Mariana G. Pinho, Ricardo Henriques, Estibaliz Gómez-de-Mariscal Preprint published in bioRxiv, April 2025 Technologies: BioImage Model Zoo (), DeepBacs (), DL4MicEverywhere (), NanoPyx (), Rescale4DL () and ZeroCostDL4Mic () Funded by: CZI, EMBO, ERC, H2021 and H2022 DOI: 10.1101/2025.04.09.647871

DL4MicEverywhere: deep learning for microscopy made flexible, shareable and reproducible Iván Hidalgo-Cenalmor, Joanna W. Pylvänäinen, Mariana G. Ferreira, Craig T. Russell, Alon Saguy, Ignacio Arganda-Carreras, Yoav Shechtman, Guillaume Jacquemet, Ricardo Henriques, Estibaliz Gómez-de-Mariscal Paper published in Nature Methods, May 2024 Technologies: BioImage Model Zoo (), DL4MicEverywhere () and ZeroCostDL4Mic () Funded by: EMBO, ERC, H2021 and H2022 DOI: 10.1038/s41592-024-02295-6