Research Team


Anna Kreshuk

Anna Kreshuk

Group Leader

EMBL, Heidelberg, Germany

Anna Kreshuk is a Group Leader at the EMBL in Heidelberg, Germany. She leads the Machine Learning for Image Analysis group.


Team members collaborating with Anna Kreshuk:


Mariana Ferreira

Mariana Ferreira

Software Engineer
H2021 AI4Life Grant funded


Publications with our group (see more on Google Scholar):


AI4Life Open Calls and Public Challenges: why, how, and what we have learned
Vera Galinova, Mehdi Seifi, Beatriz Serrano Solano, Kristína Lidayová, Damian Dalle Nogare, Agustín Andrés Corbat, Joshua Talks, Edoardo Giacomello, Estibaliz Gómez-de-Mariscal, Mariana G. Ferreira, Caterina Fuster-Barceló, Juan Manuel Battagliotti, Carlos García-López-de-Haro, Benjamin Salmon, Melisande Croft, Si Young Yie, Guillermo Rey-Paniagua, Xiaotian Hu, Sungjun Cho, Aagam Sheth, Chhayansh Porwal, Xiaomeng Li, AI4Life Consortium, Ricardo Henriques, Xinyang Li, Alexander Krull, Anna Klemm, Arrate Muñoz Barrutia, Anna Kreshuk, Wei Ouyang, Florian Jug, Joran Deschamps
Preprint published in bioRxiv, July 2026
Technologies: BioImage Model Zoo (), CARE (), DL4MicEverywhere (), mAIcrobe (), Nuclear-Pores as references and ZeroCostDL4Mic ()
Funded by: Chan Zuckerberg Initiative (CZI), The Kavli Foundation, and The Wellcome Trust, ERC, H2021, H2022 and La Caixa Foundation
DOI: 10.64898/2026.07.21.739486
Bioimage model zoo: a community-driven resource for accessible deep learning in bioimage analysis
Wei Ouyang, Fynn Beuttenmueller, Estibaliz Gómez-de-Mariscal, Constantin Pape, Tom Burke, Carlos Garcia-López-de-Haro, Craig Russell, Lucía Moya-Sans, Cristina de-la-Torre-Gutiérrez, Deborah Schmidt, Dominik Kutra, Maksim Novikov, Martin Weigert, Uwe Schmidt, Peter Bankhead, Guillaume Jacquemet, Daniel Sage, Ricardo Henriques, Arrate Muñoz-Barrutia, Emma Lundberg, Florian Jug, Anna Kreshuk
Preprint published in BioRxiv, January 2022
Technologies: BioImage Model Zoo (), CARE () and ZeroCostDL4Mic ()
Funded by: CZI, EMBO, ERC and H2021
DOI: 10.1101/2022.06.07.495102

Funding with our group

Real-Time high-content Super-Resolution Imaging of ES Cell States
Eran Meshorer, Ricardo Henriques, Anna Kreshuk, Sandrine Lévêque-Fort, Nicolas Bourg, Genevieve Almouzni
Alias: RT-SuperES
Funded by: H2022 - EIC Pathfinder Open
Duration: July 2023 - June 2027
Publications: 26
Artificial Intelligence for Image Data Analysis in the Life Sciences
Anna Kreshuk, Florian Jug, Ricardo Henriques, Wei Ouyang, Arrate Muñoz-Barrutia, Emma Lundberg, Matthew Hartley
Alias: AI4Life
Funded by: H2021 - INFRA
Duration: September 2022 - August 2025
Publications: 27